PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G089200.1
Common NameB456_003G089200, LOC105788330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 363aa    MW: 40702.4 Da    PI: 7.4829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G089200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001285307123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  Gorai.003G089200.1 285 FMCRKCGKAFAVRGDWRTHEKNC 307
                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58201223IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-6201220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64201228IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-6267305No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5281305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549285305IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808285305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MADYPYTNFF SGWFKFNPVQ HYPSPNPPPP PPPHPLQQPN SFTHDFYSNS RNDRSSHINP  60
FFHYQTSCSS SSPPSPPVRE ALPLLSLSPT RQNNEDQDQD QCSWTTAMNV DSTKGKEEGR  120
RLLFTNTTAA EAEDETVTVA LHIGLPSPSA SELASFLSSS SEITDKDGDG DDSSGCAVNR  180
LNKGQYWIPT PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT  240
GMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW  300
RTHEKNCGKL WYCICGSDFK HKRSLKDHIK AFGNGHAAYG IDGLEEDDEP ASEVEQDNDS  360
MQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470631.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-149ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D2QHR40.0A0A0D2QHR4_G
STRINGVIT_08s0007g08070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-133C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]